•The use of hybrid
 vertical coordinates and improved vertical mixing algorithms improved the quality of model
 simulations.
 –Improved
 representation of subtropical mode water.
 –Improved horizontal
 mixed layer salinity distribution in the subtropical gyre.
 –Improved resolution of
 tropical upper-ocean flow.
 –Explicit resolution of
 upper-ocean wind driven flow
 •HYCOM run in MICOM
 mode produced results extremely close to MICOM 2.8, indicating that code changes in HYCOM did not
 degrade the quality of the solution.
 •Many observed
 shortcomings of these HYCOM simulations can be traced to the lack of an ice model, surface forcing errors, the
 simple initial conditions, and the lack
 of river runoff.
 •The choice of which
 two thermodynamical variables are advected and also mixed in the vertical coordinate adjustment algorithm
 did not have a noticeable influence on
 the solutions even though in the KPP (theta-S) experiment, temperature was not conserved.