#! /usr/bin/env bash # $Header: /u/gcmpack/MITgcm/tools/example_scripts/csail/test_baudelaire,v 1.31 2016/09/29 20:52:10 jmc Exp $ # Test script for MITgcm that should work on most of the csail.mit.edu Linux machines. tst_grp=0 ; if test $# = 1 ; then tst_grp=$1 ; fi if test $tst_grp != 'a' -a $tst_grp != 'b' ; then echo "missing or invalid argument (expect: 'a' or 'b') ==> exit" exit 1 fi # defaults #export PATH="$PATH:/usr/local/bin" if [ -d ~/bin ]; then export PATH=$PATH:~/bin ; fi #- to get case insensitive "ls" (and order of tested experiments) export LC_ALL="en_US.UTF-8" # Turn off stack limit for FIZHI & AD-tests ulimit -s unlimited # MPI test (for now, only with gfortran) export MPI_GCC_DIR=/srv/software/gcc/gcc-packages/gcc-4.4.5/mpich2/mpich2-1.3 export MPI_INC_DIR=$MPI_GCC_DIR/include export PATH="$PATH:$MPI_GCC_DIR/bin" #- method to acces CVS: # export CVSROOT='/u/gcmpack' # export CVSROOT=':ext:@mitgcm.org:/u/gcmpack' # export CVS_RSH='ssh' ; cvs co -P MITgcm > /dev/null # cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack co -P MITgcm > /dev/null cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack' cmdCVS='cvs -d /u/gcmpack' # checkOut=2 : download new code ; # =3 : skip download but, if sepDir, use a new copy # =1 : update code (if no existing code -> swith to 2) # =0 : use existing code (if no existing code -> swith to 2) dInWeek=`date +%a` outDir=`hostname -s` TESTDIR="/scratch/jmc/test_${outDir}" outDir="${outDir}-${tst_grp}" MC=13 sepDir=1 option= #tst_list='g7a adm mpa g77 gfo+rs mth mp2+rs mpi ifc' #if test "x$dInWeek" = xSun ; then tst_list="$tst_list tlm oad" ; fi if test $tst_grp = 'a' ; then checkOut=2 tst_list='g7a mpa mth mp2+rs mpi oad' else checkOut=3 tst_list='adm g77 gfo+rs ifc' if test "x$dInWeek" = xSun ; then tst_list="$tst_list tlm" ; fi fi echo " test: $outDir ; list='$tst_list'" #option="-nc" ; checkOut=1 #option="-q" ; checkOut=1 TODAY=`date +%d` tdir=$TESTDIR if test $checkOut != 2 ; then if test -e $tdir/MITgcm/CVS ; then echo $tdir/MITgcm/CVS 'exist' if test $sepDir = 0 -a $checkOut = 1 ; then echo -n "Update the MITgcm code using: $cmdCVS ..." cd $tdir/MITgcm $cmdCVS update -P -d echo " done" fi else echo -n $tdir/MITgcm 'missing ; ' checkOut=2 fi fi if test $checkOut = 2 ; then if test -e $tdir ; then echo -n "Removing working copy: $tdir/MITgcm ..." test -e $tdir/MITgcm && rm -rf $tdir/MITgcm else echo -n "Creating a working dir: $tdir ..." mkdir $tdir fi echo " done" echo -n "Downloading the MITgcm code using: $cmdCVS ..." cd $tdir $cmdCVS co -P MITgcm > /dev/null echo " done" if test -d other_input ; then list_dirs=`(cd other_input ; ls 2> /dev/null )` echo "Updating ( $cmdCVS update -P -d ) 'other_input' extra dirs:" for exd in $list_dirs ; do if test -d other_input/$exd/CVS ; then echo " $exd" ( cd other_input/$exd ; $cmdCVS update -P -d ) fi done echo " <-- update of 'other_input' dirs done" fi else cd $tdir fi #------------------------------------------------------------------------ firstTst=`echo $tst_list | awk '{print $1}'` last_Tst=`echo $tst_list | awk '{print $NF}'` for tt in $tst_list do echo "================================================================" typ=`echo $tt | sed 's/+rs//'` #- define list of additional experiences to test: addExp='' if test $typ = 'mp2' -o $typ = 'ifc' ; then addExp="offline_cheapaml atm_gray" fi if test $typ = 'gfo' -o $typ = 'ifc' ; then addExp="$addExp global_oce_biogeo_bling" addExp="$addExp shelfice_remeshing" fi if test $typ = 'mpi' ; then addExp="$addExp global_oce_cs32" fi #- check day and time: curDay=`date +%d` ; curHour=`date +%H` if [ $curDay -ne $TODAY ] ; then date ; echo "day is over => skip test $typ" continue fi if [ $curHour -ge 18 ] ; then date ; echo "too late to run test $typ" continue fi if test $sepDir = 0 -a "x$option" != x -a $tt != $last_Tst ; then echo "using option='$option' prevent multi-tests => skip test $typ" continue fi #- clean-up old output files rm -f $tdir/output_${typ}* touch $tdir/output_$tt if test $sepDir = 1 ; then new_dir="MITgcm_$typ" reUse=1 ; if [ $checkOut -ge 2 ] ; then reUse=0 ; fi if test -d $new_dir/CVS -a $reUse = 1 ; then pushd $new_dir if test $tt != $typ ; then ( cd verification ; ../tools/do_tst_2+2 -clean ) fi if test $checkOut = 1 ; then echo -n "Update the MITgcm code using: $cmdCVS ..." $cmdCVS update -P -d echo " done" fi else if test -d prev ; then #-- save previous summary: oldS=`ls -t ${new_dir}/verification/tr_${outDir}_*/summary.txt 2> /dev/null | head -1` if test "x$oldS" != x ; then cp -p -f $oldS prev/tr_out.$typ ; fi if test $tt != $typ ; then oldS=`ls -t ${new_dir}/verification/rs_${outDir}_*/summary.txt 2> /dev/null | head -1` if test "x$oldS" != x ; then cp -p -f $oldS prev/rs_out.$typ ; fi fi fi test -e $new_dir && rm -rf $new_dir mkdir $new_dir pushd $new_dir cp -ra ../MITgcm/* . #-- download additional experience from Contrib: for exp2add in $addExp ; do echo " add dir: $exp2add (from Contrib:verification_other)" ( cd verification ; $cmdCVS co -P -d $exp2add \ MITgcm_contrib/verification_other/$exp2add > /dev/null ) if test $exp2add = 'global_oce_cs32' ; then echo " link dir 'other_input/core2_cnyf' in here" ( cd verification/${exp2add} ln -s ../../../other_input/core2_cnyf . ) fi if test $exp2add = 'shelfice_remeshing' ; then echo " link dir 'other_input/remeshing_code' to 'extra_code'" ( cd verification/${exp2add} ln -s ../../../other_input/remeshing_code extra_code ) fi done fi else pushd MITgcm fi cd verification #-- set the testreport command: comm="./testreport" if test $typ = 'g7a' -o $typ = 'adm' -o $typ = 'mpa' ; then comm="$comm -adm" elif test $typ = 'oad' ; then comm="$comm -oad" elif test $typ = 'tlm' ; then comm="$comm -tlm" elif test $typ = 'mth' -o $typ = 'mp2' ; then export GOMP_STACKSIZE=400m export OMP_NUM_THREADS=2 comm="$comm -mth" else comm="$comm -md cyrus-makedepend" fi comm="$comm -odir $outDir -a jmc@mitgcm.org" #-- set the optfile (+ mpi & match-precision) MPI=0 case $typ in 'g77'|'g7a') OPTFILE='../tools/build_options/linux_amd64_g77' ;; 'gfo'|'adm'|'oad'|'tlm'|'mth') comm="$comm -match $MC -devel" OPTFILE='../tools/build_options/linux_amd64_gfortran' ;; 'ifc') comm="$comm -devel" OPTFILE='../tools/build_options/linux_amd64_ifort11' ;; 'pgi') OPTFILE='../tools/build_options/linux_amd64_pgf77' ;; 'mpa'|'mpi'|'mp2') comm="$comm -match $MC -devel" ; MPI=6 OPTFILE='../tools/build_options/linux_amd64_gfortran' ;; *) OPTFILE= ;; esac #-- set MPI command: if test $MPI != 0 ; then if test $typ = 'mp2' ; then MPI=3 ; fi if test $typ = 'mpa' ; then EXE="mpirun -np TR_NPROC ./mitgcmuv_ad" else EXE="mpirun -np TR_NPROC ./mitgcmuv" fi fi #-- set specific Env Vars: if test $typ = 'oad' ; then source ~jmc/mitgcm/bin/setenv_OpenAD.sh fi if test $typ = 'ifc' ; then source /srv/software/intel/intel-11.1.073/bin/ifortvars.sh intel64 fi if test $typ = 'pgi' ; then #listT='fizhi-cs-32x32x40 fizhi-cs-aqualev20' export PGI=/srv/software/pgi/pgi-10.9 export PATH="$PATH:$PGI/linux86-64/10.9/bin" export LM_LICENSE_FILE=$PGI/license.dat fi if test $sepDir = 0 -a "x$option" = x -a $tt = $firstTst -a $checkOut != 2 ; then #-- cleaning: echo "======================" echo "Cleaning test directories:" | tee -a $tdir/output_$tt cmdCLN="./testreport -clean" echo " clean dir running: $cmdCLN" | tee -a $tdir/output_$tt $cmdCLN >> $tdir/output_$tt 2>&1 echo "======================" echo "" | tee -a $tdir/output_$tt fi #-- run the testreport command: echo -n "Running testreport using:" | tee -a $tdir/output_$tt if test "x$OPTFILE" != x ; then comm="$comm -of=$OPTFILE" fi if test $MPI = 0 ; then echo '' | tee -a $tdir/output_$tt else echo " (EXE='$EXE')" | tee -a $tdir/output_$tt comm="$comm -MPI $MPI -command \"\$EXE\"" fi if test "x$option" != x ; then comm="$comm $option" ; fi #if test $typ = 'pgi' ; then comm="$comm -t \"\$listT\"" ; fi echo " \"eval $comm\"" | tee -a $tdir/output_$tt echo "======================" eval $comm >> $tdir/output_$tt 2>&1 sed -n "/^An email /,/^======== End of testreport / p" $tdir/output_$tt echo "" | tee -a $tdir/output_$tt #-- also test restart (test 2+2=4) if test $tt != $typ then echo "testing restart using:" | tee -a $tdir/output_$tt comm="../tools/do_tst_2+2 -o $outDir -a jmc@mitgcm.org" if test $MPI = 0 ; then echo " \"$comm\"" | tee -a $tdir/output_$tt echo "======================" $comm >> $tdir/output_$tt 2>&1 else echo " \"$comm -mpi -exe $EXE\"" | tee -a $tdir/output_$tt echo "======================" $comm -mpi -exe "$EXE" >> $tdir/output_$tt 2>&1 fi echo ; cat tst_2+2_out.txt echo fi export OMP_NUM_THREADS=1 if test $sepDir = 0 ; then #-- cleaning: echo "======================" echo "Cleaning test directories:" | tee -a $tdir/output_$tt if test $tt != $typ ; then cmdCLN="../tools/do_tst_2+2 -clean" echo " clean tst_2+2 running: $cmdCLN" | tee -a $tdir/output_$tt $cmdCLN >> $tdir/output_$tt 2>&1 fi if test $tt != $last_Tst ; then cmdCLN="./testreport -clean" echo " clean dir running: $cmdCLN" | tee -a $tdir/output_$tt $cmdCLN >> $tdir/output_$tt 2>&1 fi echo "======================" echo fi popd done